Disease: Thyroid Neoplasm
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs966423
DIRC3
0.776 0.200 2 217445617 intron variant C/G;T snv 11
rs965513
PTCSC2
0.742 0.200 9 97793827 intron variant A/G;T snv 15
rs944289 0.742 0.200 14 36180040 upstream gene variant C/T snv 0.45 16
rs9344
CCND1
0.653 0.480 11 69648142 splice region variant G/A snv 0.45 0.39 34
rs907580 0.851 0.080 9 97860315 downstream gene variant T/A;C;G snv 4
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213
rs863224748
CHEK2
0.827 0.120 22 28734721 start lost T/C snv 5
rs861539
KLC1 ; XRCC3
0.519 0.680 14 103699416 missense variant G/A snv 0.29 0.30 104
rs861530
LOC112268131 ; XRCC3 ; KLC1
0.732 0.320 14 103707786 3 prime UTR variant T/C snv 0.65 13
rs79658334
RET
0.662 0.360 10 43119548 missense variant G/A;C;T snv 1.2E-04; 4.3E-06 29
rs78929565
CLOCK
0.882 0.080 4 55539035 intron variant C/A;T snv 3
rs786203472
CHEK2
0.827 0.120 22 28719414 start lost T/C snv 5
rs7850258
PTCSC2
0.827 0.200 9 97786731 intron variant A/G snv 0.72 6
rs78201625
HABP2
0.851 0.080 10 113577182 missense variant C/T snv 2.4E-03 1.8E-03 4
rs779791579
PTCH1
0.882 0.080 9 95508325 missense variant G/C snv 7.8E-04 6.1E-04 3
rs778212685
CHEK2
0.827 0.120 22 28712015 missense variant C/A;G;T snv 4.0E-06 8
rs776935407
SGSM3
0.851 0.080 22 40409261 missense variant T/A snv 4.1E-06 6
rs768891111
XRCC3 ; KLC1
0.851 0.080 14 103699474 stop gained C/A;G;T snv 4.0E-06; 4.0E-06 4
rs763538721
HIF1A-AS3 ; HIF1A
0.807 0.160 14 61740897 missense variant T/A snv 4.0E-06 8
rs75076352
RET
0.689 0.240 10 43114500 missense variant T/A;C;G snv 1.2E-05 24
rs74799832
RET
0.662 0.280 10 43121968 missense variant T/C snv 4.0E-06 33
rs747463591
CCDC6
0.882 0.080 10 59906391 missense variant C/A;G;T snv 4.9E-06; 9.9E-06 3
rs71369530
FOXE1 ; PTCSC2
0.851 0.080 9 97854419 inframe insertion GCCGCCGCCGCCGCCGCCGCCGCC/-;GCC;GCCGCC;GCCGCCGCC;GCCGCCGCCGCC;GCCGCCGCCGCCGCC;GCCGCCGCCGCCGCCGCC;GCCGCCGCCGCCGCCGCCGCC;GCCGCCGCCGCCGCCGCCGCCGCCGCC;GCCGCCGCCGCCGCCGCCGCCGCCGCCGCC;GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC;GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC;GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC delins 0.68 4
rs709399
XRCC3 ; KLC1 ; LOC112268131
0.882 0.080 14 103701208 3 prime UTR variant G/A snv 0.59 0.61 3
rs7080536
HABP2 ; NRAP
0.683 0.360 10 113588287 missense variant G/A snv 2.2E-02 2.4E-02 27